Virus Variation Resource – improved response to emergent viral outbreaks
Identifieur interne : 000F57 ( Main/Exploration ); précédent : 000F56; suivant : 000F58Virus Variation Resource – improved response to emergent viral outbreaks
Auteurs : Eneida L. Hatcher ; Sergey A. Zhdanov ; Yiming Bao ; Olga Blinkova ; Eric P. Nawrocki ; Yuri Ostapchuck ; Alejandro A. Sch Ffer ; J. Rodney BristerSource :
- Nucleic Acids Research [ 0305-1048 ] ; 2016.
Descripteurs français
- KwdFr :
- MESH :
- génétique : Virus.
- virologie : Maladies virales.
- épidémiologie : Maladies virales.
- Bases de données génétiques, Biologie informatique, Flambées de maladies, Logiciel, Variation génétique.
English descriptors
- KwdEn :
- MESH :
- epidemiology : Virus Diseases.
- genetics : Viruses.
- methods : Computational Biology.
- virology : Virus Diseases.
- Databases, Genetic, Disease Outbreaks, Genetic Variation, Software.
Abstract
The Virus Variation Resource is a value-added viral sequence data resource hosted by the National Center for Biotechnology Information. The resource is located at
Url:
DOI: 10.1093/nar/gkw1065
PubMed: 27899678
PubMed Central: 5210549
Affiliations:
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Le document en format XML
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Nawrocki</name></author><author><name sortKey="Ostapchuck, Yuri" sort="Ostapchuck, Yuri" uniqKey="Ostapchuck Y" first="Yuri" last="Ostapchuck">Yuri Ostapchuck</name></author><author><name sortKey="Sch Ffer, Alejandro A" sort="Sch Ffer, Alejandro A" uniqKey="Sch Ffer A" first="Alejandro A." last="Sch Ffer">Alejandro A. Sch Ffer</name></author><author><name sortKey="Brister, J Rodney" sort="Brister, J Rodney" uniqKey="Brister J" first="J. Rodney" last="Brister">J. Rodney Brister</name></author></titleStmt><publicationStmt><idno type="wicri:source">PMC</idno><idno type="pmid">27899678</idno><idno type="pmc">5210549</idno><idno type="url">http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5210549</idno><idno type="RBID">PMC:5210549</idno><idno type="doi">10.1093/nar/gkw1065</idno><date when="2016">2016</date><idno type="wicri:Area/Pmc/Corpus">000F57</idno><idno type="wicri:explorRef" wicri:stream="Pmc" wicri:step="Corpus" wicri:corpus="PMC">000F57</idno><idno type="wicri:Area/Pmc/Curation">000F57</idno><idno type="wicri:explorRef" wicri:stream="Pmc" wicri:step="Curation">000F57</idno><idno type="wicri:Area/Pmc/Checkpoint">000958</idno><idno type="wicri:explorRef" wicri:stream="Pmc" wicri:step="Checkpoint">000958</idno><idno type="wicri:source">PubMed</idno><idno type="RBID">pubmed:27899678</idno><idno type="wicri:Area/PubMed/Corpus">000E69</idno><idno type="wicri:explorRef" wicri:stream="PubMed" wicri:step="Corpus" wicri:corpus="PubMed">000E69</idno><idno type="wicri:Area/PubMed/Curation">000E69</idno><idno type="wicri:explorRef" wicri:stream="PubMed" wicri:step="Curation">000E69</idno><idno type="wicri:Area/PubMed/Checkpoint">000A61</idno><idno type="wicri:explorRef" wicri:stream="Checkpoint" wicri:step="PubMed">000A61</idno><idno type="wicri:Area/Ncbi/Merge">001865</idno><idno type="wicri:Area/Ncbi/Curation">001865</idno><idno type="wicri:Area/Ncbi/Checkpoint">001865</idno><idno type="wicri:doubleKey">0305-1048:2016:Hatcher E:virus:variation:resource</idno><idno type="wicri:Area/Main/Merge">000F60</idno><idno type="wicri:Area/Main/Curation">000F57</idno><idno type="wicri:Area/Main/Exploration">000F57</idno></publicationStmt><sourceDesc><biblStruct><analytic><title xml:lang="en" level="a" type="main">Virus Variation Resource – improved response to emergent viral outbreaks</title><author><name sortKey="Hatcher, Eneida L" sort="Hatcher, Eneida L" uniqKey="Hatcher E" first="Eneida L." last="Hatcher">Eneida L. Hatcher</name></author><author><name sortKey="Zhdanov, Sergey A" sort="Zhdanov, Sergey A" uniqKey="Zhdanov S" first="Sergey A." last="Zhdanov">Sergey A. Zhdanov</name></author><author><name sortKey="Bao, Yiming" sort="Bao, Yiming" uniqKey="Bao Y" first="Yiming" last="Bao">Yiming Bao</name></author><author><name sortKey="Blinkova, Olga" sort="Blinkova, Olga" uniqKey="Blinkova O" first="Olga" last="Blinkova">Olga Blinkova</name></author><author><name sortKey="Nawrocki, Eric P" sort="Nawrocki, Eric P" uniqKey="Nawrocki E" first="Eric P." last="Nawrocki">Eric P. Nawrocki</name></author><author><name sortKey="Ostapchuck, Yuri" sort="Ostapchuck, Yuri" uniqKey="Ostapchuck Y" first="Yuri" last="Ostapchuck">Yuri Ostapchuck</name></author><author><name sortKey="Sch Ffer, Alejandro A" sort="Sch Ffer, Alejandro A" uniqKey="Sch Ffer A" first="Alejandro A." last="Sch Ffer">Alejandro A. Sch Ffer</name></author><author><name sortKey="Brister, J Rodney" sort="Brister, J Rodney" uniqKey="Brister J" first="J. Rodney" last="Brister">J. Rodney Brister</name></author></analytic><series><title level="j">Nucleic Acids Research</title><idno type="ISSN">0305-1048</idno><idno type="eISSN">1362-4962</idno><imprint><date when="2016">2016</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Computational Biology (methods)</term><term>Databases, Genetic</term><term>Disease Outbreaks</term><term>Genetic Variation</term><term>Software</term><term>Virus Diseases (epidemiology)</term><term>Virus Diseases (virology)</term><term>Viruses (genetics)</term></keywords><keywords scheme="KwdFr" xml:lang="fr"><term>Bases de données génétiques</term><term>Biologie informatique ()</term><term>Flambées de maladies</term><term>Logiciel</term><term>Maladies virales (virologie)</term><term>Maladies virales (épidémiologie)</term><term>Variation génétique</term><term>Virus (génétique)</term></keywords><keywords scheme="MESH" qualifier="epidemiology" xml:lang="en"><term>Virus Diseases</term></keywords><keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>Viruses</term></keywords><keywords scheme="MESH" qualifier="génétique" xml:lang="fr"><term>Virus</term></keywords><keywords scheme="MESH" qualifier="methods" xml:lang="en"><term>Computational Biology</term></keywords><keywords scheme="MESH" qualifier="virologie" xml:lang="fr"><term>Maladies virales</term></keywords><keywords scheme="MESH" qualifier="virology" xml:lang="en"><term>Virus Diseases</term></keywords><keywords scheme="MESH" qualifier="épidémiologie" xml:lang="fr"><term>Maladies virales</term></keywords><keywords scheme="MESH" xml:lang="en"><term>Databases, Genetic</term><term>Disease Outbreaks</term><term>Genetic Variation</term><term>Software</term></keywords><keywords scheme="MESH" xml:lang="fr"><term>Bases de données génétiques</term><term>Biologie informatique</term><term>Flambées de maladies</term><term>Logiciel</term><term>Variation génétique</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en"><title>Abstract</title><p>The Virus Variation Resource is a value-added viral sequence data resource hosted by the National Center for Biotechnology Information. The resource is located at <ext-link ext-link-type="uri" xlink:href="http://www.ncbi.nlm.nih.gov/genome/viruses/variation/">http://www.ncbi.nlm.nih.gov/genome/viruses/variation/</ext-link> and includes modules for seven viral groups: influenza virus, <italic>Dengue virus, West Nile virus, Ebolavirus</italic>, MERS coronavirus, <italic>Rotavirus A</italic> and <italic>Zika virus</italic>. Each module is supported by pipelines that scan newly released GenBank records, annotate genes and proteins and parse sample descriptors and then map them to controlled vocabulary. These processes in turn support a purpose-built search interface where users can select sequences based on standardized gene, protein and metadata terms. Once sequences are selected, a suite of tools for downloading data, multi-sequence alignment and tree building supports a variety of user directed activities. 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Rodney Brister</name><name sortKey="Hatcher, Eneida L" sort="Hatcher, Eneida L" uniqKey="Hatcher E" first="Eneida L." last="Hatcher">Eneida L. Hatcher</name><name sortKey="Nawrocki, Eric P" sort="Nawrocki, Eric P" uniqKey="Nawrocki E" first="Eric P." last="Nawrocki">Eric P. Nawrocki</name><name sortKey="Ostapchuck, Yuri" sort="Ostapchuck, Yuri" uniqKey="Ostapchuck Y" first="Yuri" last="Ostapchuck">Yuri Ostapchuck</name><name sortKey="Sch Ffer, Alejandro A" sort="Sch Ffer, Alejandro A" uniqKey="Sch Ffer A" first="Alejandro A." last="Sch Ffer">Alejandro A. Sch Ffer</name><name sortKey="Zhdanov, Sergey A" sort="Zhdanov, Sergey A" uniqKey="Zhdanov S" first="Sergey A." last="Zhdanov">Sergey A. Zhdanov</name></noCountry></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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